CephExplorer

Explore cephalopod gene families with context

CephExplorer turns Orthofinder outputs into an interactive atlas of orthogroups across cephalopod species. Browse gene families, jump to specific genes, and inspect tree structure without juggling spreadsheets.

What this app does

CephExplorer is a front-end for Orthofinder results, designed to surface orthogroups, gene identifiers, and tree structure in a single place.

  • See orthogroup descriptions at a glance.
  • Inspect gene tree topology for each family.
  • Navigate between genes and their orthogroups instantly.

Why it is helpful

Orthofinder outputs can be dense. This interface makes it easier to spot gene family expansions, track orthologs across species, and support annotation work.

  • Reduce manual lookups across multiple files.
  • Keep biological context attached to every gene.
  • Share consistent views with collaborators.

How to use it

Start with whichever direction feels natural: browse families, or search for a gene you already know. The views are connected, so you can pivot quickly.

  • Browse orthogroups to get a survey of gene families.
  • Search for a gene ID to jump into its orthogroup.
  • Tune the tree controls to focus on the branches you need.
Tip: The orthogroup tree view includes controls for width, height, tip spacing, and font size so you can make dense families readable.